Garlic

A virus spread by the beet leafhopper (*Circulifer tenellus*), mainly a problem in the western US — California, Arizona, Colorado, Idaho, New Mexico, Utah, and Washington. It has a broad host range, infecting beets, tomatoes, peppers, beans, and cucurbits. Infected plants develop curled, thickened leaves with purple-tinged veins on the undersides, stunted growth, and fruit that ripens prematurely. The leafhopper transmits the virus while migrating: it lands and briefly probes plants, and a single feeding of just a few seconds is enough to infect.

Triggers: Driven by leafhopper migration, not weather directly. The bugs overwinter in foothill weeds and head for gardens in late spring once the wild vegetation dries up. Hot, dry years push more of them into populated areas. Symptoms show up 7-14 days after a single leafhopper visit — and a single bite is all it takes.

Risk fades when: Migration peaks in late spring; once the main wave passes, transmission risk drops sharply. The virus doesn't hide in soil or plant debris between seasons, so risk resets each year.

A soil-borne fungus (*Sclerotium rolfsii*) that attacks plant stems right at the soil line during hot weather. It hits over 500 different plant species. Two telltale signs to look for: white fan-shaped fungal growth on the lower stem, mulch, and soil surface, and tan-brown spherical sclerotia (they look like mustard seeds) on infected tissue. Most active during sustained heat with humid conditions.

Triggers: Optimal at 86°F (30°C) soil and air temperature with humid conditions. Inactive below 70°F. Most damaging during sustained mid- to late-summer heat waves. It extends further north in warmer-than-normal seasons.

Risk fades when: Sustained cooler weather — highs below 80°F and overnight lows below 70°F for 5+ days — reduces fungal activity. The sclerotia (resting bodies) persist in soil for years, so resolution is seasonal, not curative.

A seedling killer caused by several different fungi working together. It hits vegetables, flowers, herbs, microgreens, and cover-crop seedlings the same way — seeds rot before they emerge, or young seedlings collapse right at the soil line. Wet seed-starting mix and poor airflow in seedling trays are the classic conditions.

Triggers: Wet soil or starting mix, poor drainage, seedlings packed too tightly, contaminated trays or media, and stagnant air all favor damping-off.

Risk fades when: Drying the soil surface and improving airflow slows new spread. Collapsed seedlings don't recover, but the rest of the tray can be saved.

The Delia root-maggot complex includes the cabbage maggot (D. radicum) on brassicas and root crops, the seedcorn maggot (D. platura) on bean/pea/corn seedlings, and several other species. Larvae tunnel into roots, basal stems, and seeds, killing seedlings outright or creating tunnels that ruin root crops for market. A 2021 Oregon industry survey found 100% of root crop growers reported cabbage maggot damage; 44% with 10-25% yield loss.

Triggers: Overwinter as pupae in soil/crop residue. Adults emerge early spring (300-600 GDD base 40°F after Jan 1 in PNW). Cool moist soils favor egg survival; soil >95°F in top 2-3 inches kills eggs. Multiple generations per year. Seedcorn maggot attracted to decaying organic matter — high risk after fresh-incorporated cover crop.

Risk fades when: Cool, wet weather favors root maggots and damage is worst in early spring, dropping to its lowest in midsummer when soil temperatures above about 95 F kill the eggs; a late-summer flight can still injure fall root crops, so risk returns as weather cools (UMaine Extension, Wisconsin Hort, UNH Extension).

SoilStack treats this entry as allium white rot for field alert purposes, rather than Botrytis neck rot (which is mostly a post-harvest storage issue). White rot is allium-specific and causes yellowing, wilt, decay of the basal plate (where roots attach), white fungal growth, and tiny black poppy-seed-like resting bodies (sclerotia). It thrives in cool, moist soil.

Triggers: Cool moist soil favors infection. Development is optimal around 60-65°F and slows sharply above the upper 70s.

On Music Hardneck Garlic: Poor drainage and long wet periods rot cloves or maturing bulbs.

Prevention: Plant in well-drained soil and cure bulbs thoroughly after harvest.

Risk fades when: White rot is markedly inhibited above 78°F and reduced by drying soil, though the sclerotia persist in soil for years.

An allium-specific rust on garlic, onion, leek, shallot, and chives. Produces orange to reddish pustules on older leaves first. Favored by cool, humid weather.

Triggers: Optimal infection is near 59°F with saturated humidity for several hours. The disease stays active in cool 57-75°F weather with dew or high humidity.

On Music Hardneck Garlic: Humid foliage and dense plantings allow orange rust pustules to spread.

Prevention: Space well, water early, and remove heavily infected leaves.

Risk fades when: Rust thrives in cool saturated air. Dry foliage or heat above the favorable range lowers new infection pressure.

Aphids are soft-bodied sap-sucking insects that cluster on tender new growth. Most established plants tolerate moderate populations and will outgrow damage on their own, but aphids are the most important plant virus vectors in the garden, transmitting more than 100 plant viruses including potato leafroll, cucumber mosaic, and turnip mosaic. Honeydew excreted while feeding supports sooty mold growth and attracts ants that protect aphids from natural enemies.

Triggers: Optimal development at ~75°F (green peach aphid) per UC IPM Floriculture; melon aphid develops fastest above 75°F. Many species heat-intolerant above 90°F and crash in mid-summer. Soft new growth and over-fertilization with high N favor population buildup. Females give live birth parthenogenetically most of growing season — one generation in ~1 week under optimal conditions.

Risk fades when: Per UC IPM and Clemson HGIC, populations crash in mid-summer heat (>90°F) for many species, return in cooler conditions

Flea beetles are small (1/16-inch) shiny beetles that jump like fleas when disturbed. They chew small round 'shothole' or 'pinhole' damage in leaves and can destroy emerging cotyledons of broccoli or eggplant in 24 hours. Most species are host-family specific — crucifer flea beetle on brassicas, tuber flea beetle on potatoes, eggplant flea beetle on solanaceous crops.

Triggers: Overwinter as adults in leaf litter and field margins. Active at mid- to late-spring temperatures. Warm winter → higher next-spring populations (NC State). Hot dry conditions amplify damage on stressed seedlings.

Risk fades when: UMN: 1-2 generations in Minnesota, populations crash after mid-June

Microscopic soil-dwelling roundworms that burrow into plant roots and cause swollen knots (galls). Above ground, the plant looks stunted, yellowed, and wilted even with plenty of water. They attack over 2,000 plant species, so almost nothing is safe. They're most active in warm soil (70-85°F) and do more damage in sandy soils, where they move easily. Once a bed has them, populations stick around for years.

Triggers: Soil temperatures of 70-85°F are ideal for them; below 60°F they go dormant. Sandy soils make it easy for them to move and reproduce, while heavy clay slows them down considerably. In warm soil, a full generation completes in about 27 days.

Risk fades when: Activity drops sharply once soil cools below 60°F. Damage stops accumulating for the season, but the population stays in the soil and returns when warmth does.

Slugs and snails are nocturnal mollusks that chew irregular holes in leaves and clip off succulent seedlings. They leave characteristic silvery slime trails. Hermaphroditic and prolific, brown garden snails lay around 80 eggs per month for up to six clutches per year.

Triggers: Active at night and early morning in damp conditions. Coastal CA and southeast — active year-round. Spring rains and dense ground cover (mulch, debris, weeds) create harborage.

Risk fades when: Hot, dry summer weather drives slugs and snails into inactivity, so risk drops sharply once conditions turn warm and dry; populations are highest in cool, wet spring and fall, and in mild-winter coastal regions they can stay active year-round (UMN Extension, Penn State, UC IPM).